Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015858206.1_cds_XP_016513797.1_26306
CDS Infomation

[gene=LOC107830682] [db_xref=GeneID:107830682] [protein=cysteine protease ATG4-like isoform X2] [protein_id=XP_016513797.1] [location=join(42095..42554,42671..42756,43228..43278,43500..43879,45645..45783,47111..47166,47252..47322,47429..47649)] [gbkey=CDS]
Sequence

ATGCCTAAAAAAACCCAAATTAGTAAAAGTTCCTCTGATTCAGATTCCCCAAGAAAAAAT
CTTGGTTCTTTAATTTCTTCAGAACCAGAACCAGGACCAAGCAGTAACATAAAAACTTCT
GTTTGGTCTGGTTTTTTGGTTTCTCCTTTTTCAATATTTGATACTGAGCCAAAAGGGTGT
TTAAAAAAAGGTGACTTAAGTTCAAAGAAGTATTATAATGGTATTGGTATTAATTGGACT
AGTGCTGTGAAAAGAATGATGAATAGTGGCTCAATGAGGAGGATTTTTGGGATTAATAAA
ACTGGGATTCCCAATGGCTCTAAAAGTGATATTTGGCTTTTAGGTGTTTGTTATAAAGTT
GTTCAAGATGATGATCCATCAATTGAACCAACTCAAAGTGAAGGTTTTTCAGCTTTTGTT
GATGATTTCTCATCTAGGATTCTTGTTACATATCGAAAAGGGTTTCCTCCTATTGGAGAT
TCTAAGTATACCAGTGATGTTAATTGGGGTTGCATGCTTAGGAGCAGTCAGATGCTTGTT
GCTCAGGCTCTACTTCTTCATCGATTAGGAAGATCTTGGAGAAAATCTTTGGACAAGCCG
CATGACCAAAAGTATGTTGATATATTGCACCTTTTTGGCGATTCGGAGGAGTCAGCTTGC
TCTATCCACAACCTCCTTCAAGCCGGGAAGACATATGGCCTTTCTCCTGGATCATGGGTG
GGCCCATATGCAATGTGTCGCACTTGGGAAACATTAGCACGCAGCAAGAGAGAAGAAACG
GGGAATGCTGACATGTCTTCTCTCATGTCTTTCTATGTTGTATCTGGGGATGAAGATGGA
GAAAGAGGCGGAGCGCCCGTGCTCTGTGTTGAGGACATTGTCAGGCATTGTTCTGACTTG
TCAAACGGCGAAGTTGACTGGATACCTGTTCTTTTCTTAGTTCCGTTGGTTCTTGGACTT
GACAAAATCAATTCAAGGTATCTTCCTTTACTGGCAGCTACATTCAGTTTTCCTCAAAGC
CTTGGGATCCTAGGTGGCAGACCTGGAGCCTCGACTTACATTGTCGGCGTGCAAGATGAT
CAAGCCTTTTATCTTGATCCACATGAAGTTCAGCCAGTTGTTGATATTAAAACGGACAAG
TTAGATATTGATACTTCATCTTATCACTGCAATACTCTAAGGCATTTCCCTCTGGATTCA
ATTGATCCATCCTTGGCAATTGGATTTTATTGTAGAGATAAAAGTGATTTTGATGATTTC
TGTATACGAGCATCTAAGTTAGTGGATCAATCAAATGGTGCTCCATTGTTTACTATAACT
GAAACCCGTAGCTCCCCAACAGCAGTTGAGTATAACGACAGGGTGACTAGTAATTCTGGG
GTTCCGGAACTGGATTCCTTCGATGCTGTGGGCCCAGGTGAATCGGATGGTGGTAGACCT
GAAGATGAGTGGCAACTACTTTGA

Peptide Sequence

PEP ID

XP_016513797.1
PEP Infomation

PREDICTED: cysteine protease ATG4-like isoform X2 [Nicotiana tabacum]
Sequence

MPKKTQISKSSSDSDSPRKNLGSLISSEPEPGPSSNIKTSVWSGFLVSPFSIFDTEPKGC
LKKGDLSSKKYYNGIGINWTSAVKRMMNSGSMRRIFGINKTGIPNGSKSDIWLLGVCYKV
VQDDDPSIEPTQSEGFSAFVDDFSSRILVTYRKGFPPIGDSKYTSDVNWGCMLRSSQMLV
AQALLLHRLGRSWRKSLDKPHDQKYVDILHLFGDSEESACSIHNLLQAGKTYGLSPGSWV
GPYAMCRTWETLARSKREETGNADMSSLMSFYVVSGDEDGERGGAPVLCVEDIVRHCSDL
SNGEVDWIPVLFLVPLVLGLDKINSRYLPLLAATFSFPQSLGILGGRPGASTYIVGVQDD
QAFYLDPHEVQPVVDIKTDKLDIDTSSYHCNTLRHFPLDSIDPSLAIGFYCRDKSDFDDF
CIRASKLVDQSNGAPLFTITETRSSPTAVEYNDRVTSNSGVPELDSFDAVGPGESDGGRP
EDEWQLL

Transcript Sequence

Gene sequence data has not been registered.